Proteins - Protein denaturation, protein stability - Agregation proteins

11 important questions on Proteins - Protein denaturation, protein stability - Agregation proteins

What determinist of a unfolded protein starts forming aggregates?

  1. Protein protein interaction (hydrophobic interactions)
  2. Protein-solvent interactions (electrostatic interactions)

Where is the natural pI of a protein?

Around 4 or 5.
This is because there usually are more acids than basic amino acids present.
(Glu + Asp > Lys + Arg + His)

At this point the net charge of the proteins is 0, and therefore there is no electrostatic repulsion

Where is natural the pI of a protein?

Around 4 or 5.
This is because there usually are more acid then basic amino acids present.
(Glu + Asp > Lys + Arg + His)
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What happens to the pI of a sample when you hydrolyse the protein?

There is not a clear pI due to the different pI of the peptides

What happens to beta-lactoglobulin when you add salt.

Without salt the solubility is the lowest in the pI. This is very significant.
When salt is added the interaction with the solvent becomes more.
This is called salting in.

Why as 0.5 NaCl a completely different value for soy glycinin?

When more NaCl is added you will have a structural change in your protein. 11s complexes will be formed instead of 7s complexes. This causes that the lysin will be more on the inside of the protein complex. So the lysin that caused a low solubility is not there anymore. This is why the 0.5 NaCl has such a different form.

If a typical protein is hydrolyzed. What would be the explanation of the loss of solubility at pH7?

Under conditions where the native (non-hydrolyses) protein is very highly soluble, typically we see a decrease of the solubility upon hydrolysis. There are tow likely reasons:
  1. The highe solubility of a native protein is aa result of the fact that the pH is then far away from the from the pI. If we hydrolyse, there is not 1 pI anymore. By consequence at any pH there are some peptides that are close to their pI.
  2. There is exposure of hydrophobic groups upon hydrolysis. This may induce aggregation between peptides, which also decrease the solubility.

What is the effect on proteins by a short and a long period of heat treatment?

Short period of (heat) treatment: reversible

Long period of (heat) treatment: irreversible
due to
* aggregation (only irreversible if you have enough of this)
* deamidation
* destruction of residues

What does protein aggregation lead to?

- Low concentration: precipitation (Gln, Asn)
- High concentration: gelation (Cys)

What is the difference between a heat set and a cold set gel?

In a heat set gel you get by the aggregates formed during heating.

In cold set gel you change the pH to the pI of  your proteins. Now you get less soluble proteins and aggregates will be formed.

To make a gel, a space-filling three-dimensional network of clustered proteins aggregates a certain minimal protein concentration is needed. This minimal concentration can very form condition to condition. Looking to the different types of aggregates would the minimal gel concentration increase or decrease with ionic strength?

With an increase in ionic strength, we got more compact aggregates, i.e. to achieve the same size (radius) of the aggregates more protein is needed. In addition, there is less electrostatic repulsion between the formed aggregates. This means that more aggregates ar needed to form a space-filling network. Both factors lead to the conclusion that the minima gel concentration is expected to increase with increasing ionic strength.

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