Summary: Advanced Molecular Biology
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1 LE 1: Molecular Biology Techniques
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1.1 Anlysis techniques
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What techniques can be used for specific DNA/RNA analysis?
Quantitative PCR (qPCR) and Southern & Northern blot -
Which techniques can be used for analysis of all mRNA/cDNA present?
Mircoarray and Next Generation Sequencing (NGS) -
Which technique can be used for analysis of all proteins present?
Mass-spectrometry -
Which technique can sort on DNA/RNA content?
Fluorescence activated cell sorting (FACS) -
Which techniques can be used to locate proteins?
Differential/density gradient centrifugation, Immunofluorescence assay (IFA) and Live cell imaging -
Which techniques can be used to locate DNA and RNA?
DNA-FISH, RNA-FISH -
Which techniques can measure the interaction between protein and DNA/RNA?
Electrophoretic mobility shift assay (EMSA ), Chromatin immunoprecipitation (ChIP), RNA immunoprecipitation (RIP) -
Which teqniques can measure the protein-protein interactions?
Coimmunoprecipitation (Co-IP), Fluorescent resonance energy transfer (FRET) -
1.2 Mutations
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Give two characteristics of a gain of function mutation
1. Substantial increase in protein production of acquisition of a new function
2. Typically dominant -
What is targeted mutagenisis?
Targeted experimental modification of specific gene locus or gene product
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Topics related to Summary: Advanced Molecular Biology
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LE 2: Trancscriptional control of gene expression I - Prokaryotes
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LE 2: Trancscriptional control of gene expression I - Eukaryotes
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LE 3: Transcriptional control of gene expression II
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LE 4: Transcriptoinal control of gene expression III - Nuclear hormone receptors
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LE 4: Transcriptoinal control of gene expression III - Heat shock response
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LE 4: Transcriptoinal control of gene expression III - Chromatin
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LE 5: Post transcritptional gene control I - Splicing
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LE 6: Post transcriptional gene control II - Exon junction complex (EJC)
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LE 6: Post transcriptional gene control II - Alternative processing
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Post transcriptional gene control III - Micro RNA (miRNA)
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Post transcriptional gene control III - Regulation of eukaryotic mRNA degradation
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Post transcriptional gene control III - Gene-specific mRNA regulation
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Post transcriptional gene control III - Ribosomal RNA synthesis
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The three R's of DNA metabolism - Elongation of DNA polymerases
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The three R's of DNA metabolism - Telomeres
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The three R's of DNA metabolism - Double standed break (DSB)
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Cell cycle I - Cyclin
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Cell cycle I - Genetic dissection of the cell division cycel (cdc)
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Cell cycle I - Spindle checkpoint
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Cell cycle II - Telophase
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Cell cycle II - mammalian cell cycle contol
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Cell cycle II - Cyclin-dependent kinases (Cdk's) and cyclins in the mammalina cell cycle
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Cell cycle II - Checkpoints in cell-cylce regulation
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Cancer - Sustaining proliferative signaling
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Cancer - Evading growth suppressors
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Cancer - Therapy
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Cancer - miRNAs in cancer