Calling Somatic SNVs
4 important questions on Calling Somatic SNVs
G pop freqs
Reported issues with variant calling
- Missing variants in BAM file
- ClusterEvents filter out clinically relevant variants
- Too many indels being called
Variant Effect Predictor (VEP)
Gives location, consequence, known variants, affected genes etc.
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How to find driver genes?
- Pathway analysis
- Genes that are most often mutated in a certain cancer type
The question on the page originate from the summary of the following study material:
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